Wang Jiuming (王久铭)

My given name is Jiuming, where J sounds the same as in "Beijing" or "Mt. Fuji". I'm open to any approximation, so please feel free to use your most comfortable pronunciations!

Department of Computer Science and Engineering
The Chinese University of Hong Kong
Office: Room 904, Ho Sin-Hang Engineering Building
Email: jmwang@link.cuhk.edu.hk

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About

I am currently a PhD candidate at the Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK), supervised by Prof. Li Yu. My PhD research is supported by the Hong Kong PhD Fellowship Scheme (HKPFS). Before that, I obtained my Bachelor of Engineering degree (First Class) also at CUHK, with a major in Artificial Intelligence. My current research focuses on developing deep-learning-based models for studying and engineering RNA sequences, structures, and functions.

Publications

* equal contribution, † correspondence

Exploring functional insights into the human gut microbiome via the structural proteome

H. Liu*, J. Shen*, Z. Zhang*, J. Wang*, C. Zhang*, L. Zheng, H. Ni, L. Hong, J. Zhang, D. Xue, J. Chen, Q. Yu, Z. Qu, Y. Ma, T. Si, L. Zheng, S. Wang, C. Jiang, Y. Li^†, K. Wang^† & L. Dai^†

Cell Host & Microbe, 2025

Article Code

Deep learning for RNA structure prediction

J. Wang*, Y. Fan*, L. Hong, Z. Hu & Y. Li^†

Current Opinion in Structural Biology, 2025

Article Code

Accurate RNA 3D structure prediction using a language model-based deep learning approach

T. Shen*, Z. Hu*, S. Sun*^†, D. Liu*^†, F. Wong, J. Wang, J. Chen, Y. Wang, L. Hong, J. Xiao, L. Zheng, T. Krishnamoorthi, I. King, S. Wang^†, P. Yin^†, J. J. Collins^† & Y. Li*^†

Nature Methods, 2024

Article Code Server Research Briefing @ Nature Methods

Deep generative design of RNA aptamers using structural predictions

F. Wong*, D. He*, A. Krishnan, L. Hong, A. Z. Wang, J. Wang, Z. Hu, S. Omori, A. Li, J. Rao, Q. Yu, W. Jin, T. Zhang, K. Ilia, J. X. Chen, S. Zheng, I. King, Y. Li^† & J. J. Collins^†

Nature Computational Science, 2024

Article Code

A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data

S. Chen*, J. Wang*, I. Jung, Z. Qiu, X. Gao & Y. Li^†

Genome Research, 2024

Article Code

Fast, sensitive detection of protein homologs using deep dense retrieval

L. Hong*, Z. Hu*, S. Sun*^†, T. Xiang*, J. Wang, Q. Tan, L. Zheng, S. Wang, S. Xu, I. King, M. Gerstein^† & Y. Li*^†

Nature Biotechnology, 2024

Article Code Research Briefing @ Nature Biotechnology Research Highlight @ Nature Methods

AcrNET: predicting anti-CRISPR with deep learning

Y. Li*, Y. Wei*, S. Xu, Q. Tan, L. Zong, J. Wang, Y. Wang, J. Chen, L. Hong & Y. Li^†

Bioinformatics, 2023

Article Code Server

Deep autoencoder for interpretable tissue-adaptive deconvolution and cell-type-specific gene analysis

Y. Chen*, Y. Wang*, Y. Chen, Y. Cheng, Y. Wei, Y. Li, J. Wang, Y. Wei, T. Chan^† & Y. Li^†

Nature Communications, 2022

Article Code

Teaching

2024 Spring
Teaching Assistant: AIST4010/ESTR4140 Foundation of Applied Deep Learning
2023 Fall
Teaching Assistant: BMEG3105/ESTR3605 Data analytics for personalized genomics and precision medicine

Awards (selected)

Best Teaching Assistant Award, CSE, CUHK
Hong Kong PhD Fellowship, Research Grants Council, Hong Kong Government
CUHK Vice-Chancellor Scholarship, CUHK
Yao Fellowship, CSE, CUHK
Hong Kong SAR Government Scholarship, Education Bureau, Hong Kong Government
Professor Charles K. Kao Research Exchange Scholarship, Engineering Faculty, CUHK
Gold Award for Academic Excellence, CSE, CUHK
Master's List Award, S. H. Ho College, CUHK

Email	jmwang@link.cuhk.edu.hk
Mail Address	Room 904, Ho Sin-Hang Engg Bldg, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR